PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g01120.1
Common NameLR48_Vigan10g041300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 173aa    MW: 19022.2 Da    PI: 8.291
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g01120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.67.2e-291163357
     ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                    +  Y+eCl+NhAaslG++a+DGCgEf+ +   + ++++l+CaACgCHRnFHR+ +
  Vang02g01120.1 11 NSIYRECLRNHAASLGSYATDGCGEFTLD--VDVSSSSLQCAACGCHRNFHRKVT 63
                    678*************************8..66789*****************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.2E-241363IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.7971462IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-241461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-201461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-2891159IPR009057Homeodomain-like
SuperFamilySSF466893.88E-1592157IPR009057Homeodomain-like
TIGRFAMsTIGR015655.2E-2898156IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MENSSSSSSS NSIYRECLRN HAASLGSYAT DGCGEFTLDV DVSSSSLQCA ACGCHRNFHR  60
KVTCPGAMEG LQIGGSGDIM EYSGGDVGRI EMGERSSRKR FRTKFSAEQK EKMLAFAEKL  120
GWKLQRREVD DEIERFCKSV GVTRQVFKVW MHNHKNNSNS SNSSANLSSL TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-23991611879ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506983.11e-102PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotQ9M9S01e-39ZHD4_ARATH; Zinc-finger homeodomain protein 4
SwissprotQ9SB615e-40ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0L9VHJ91e-126A0A0L9VHJ9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TC351e-126A0A0S3TC35_PHAAN; Uncharacterized protein
STRINGGLYMA09G30061.12e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-32homeobox protein 22
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]